Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs11743410 chr5:96124453 A/G 1.4E-6 299 21.33 24.08 6.73 KM Plot
CESC rs117455231 chr8:144405380 G/A 5.48E-5 290 27.2 21.1 18 KM Plot
CESC rs11746534 chr5:96124807 G/A 1.4E-6 299 21.33 24.08 6.73 KM Plot
CESC rs11748519 chr5:96119328 C/A 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs11750934 chr5:96118487 A/C 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs117560728 chr17:29070938 A/C 0 288 21.2 21.08 2.47 KM Plot
CESC rs11768295 chr7:108595963 T/C 5.03E-5 297 21.85 21.13 11.6 KM Plot
CESC rs11775040 chr8:26909748 C/G 6.06E-5 292 15.7 21.2 26.53 KM Plot
CESC rs117833443 chr10:81738136 A/C 3.45E-9 297 25.17 16.42 2.62 KM Plot
CESC rs11784537 chr8:127623315 G/A 5.89E-5 294 20.63 29.67 22.53 KM Plot
CESC rs11801361 chr1:165087406 C/T 6.21E-5 290 21.97 21.3 9.17 KM Plot
CESC rs118108016 chr12:12482820 C/A 0 289 23.3 18.07 0.47 KM Plot
CESC rs11811899 chr1:59088316 T/G 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs118134654 chr10:81744381 G/A 3.45E-9 297 25.17 16.42 2.62 KM Plot
CESC rs1184942 chr10:88229032 C/G 1.74E-14 296 3.33 24.6 21.2 KM Plot